DNA Thermus
bio · 36 views
bio
What It Is
Thermus thermophilus complete genome (NC_006461). Hyperthermophile bacterium with extreme GC content (~69%), opposite bias to Plasmodium.
Interpretation
Standard analysis sees: right-skewed; few distinct values. The atlas finds no named structure, but the source is distinctively extreme on Cantor Set:mean_gap (-4.8z) — beyond what the standard bank predicts for it.
What standard analysis sees
tail heaviness0.73
asymmetry0.88
occupancy0.11
short-range corr0.36
long-range memory0.48
spectral colour0.64
periodicity0.31
complexity0.56
time-irreversibility0.71
volatility clustering0.35
multifractality0.25
dimensionality0.38
nonstationarity0.52
What the atlas adds
Atlas-extreme metrics the standard bank can’t predict for this source
Cantor Set:mean_gap | -4.8z | bank-miss 1.2σ |
Nonstationarity:change_quantiles_high | +4.3z | bank-miss 2.1σ |
Zipf–Mandelbrot (8-bit):zipf_alpha | +3.6z | bank-miss 3.2σ |
Spectral Graph:spectral_dim | +3.1z | bank-miss 1.9σ |
Composition
dtypeuint8
range[65, 84]
unique values4 / 16384
mean ± std70.5 ± 5.95
Fixed alphabet — only 4 distinct symbols across 16384 samples.
Render Gallery
Native > phase_plotraw
Native > timeseriesraw
Native > triple_latticeraw
Boltzmann > lag_map
Boltzmann > spin_grid
Cayley > default
Chladni > plate_bottom
Chladni > plate_top
_(centered)/signed_log_z/DNA_Thermus.png)
Heisenberg (Nil) (centered) > signed_log_z
_(centered)/xy_path/DNA_Thermus.png)
Heisenberg (Nil) (centered) > xy_path
Hodge–Laplacian > default
/barcode/DNA_Thermus.png)
Inflation (Substitution) > barcode
/d_curve/DNA_Thermus.png)
Inflation (Substitution) > d_curve
Information Theory > default
Julia Set > escape_histogram
Klein Bottle > default
Laplacian > default
Logarithmic Spiral > default
Möbius-S³ > mobius_cylinder
Möbius-S³ > s2_base_map
Ordinal Partition > default
/phi_spectrum/DNA_Thermus.png)
Penrose (Quasicrystal) > phi_spectrum
Persistent Homology > barcode
Persistent Homology > h1_diagram
Predictability > default
Recurrence Quantification > default
Spectral Analysis > default
Spectral Graph > default
Spirograph > mode_spectrum
Spirograph > phasor_trajectory
Symplectic > flux_grid
Symplectic > phase_space
/default/DNA_Thermus.png)
Ulam Spiral (Sacks) > default
/default/DNA_Thermus.png)
Ulam Spiral (Square) > default
Visibility Graph > default
Wavelet Cascade > default
Atlas Position
| Nearest neighbor | Distance | |
|---|---|---|
| DNA Phage Lambda | 3.06 | |
| Codon Usage | 3.22 | |
| DNA Chimp | 3.31 |
Which Geometries Light Up
Cantor Set › Cantor Set:max_gap | rank 295/298 | 0.0229 |
Nonstationarity › Nonstationarity:change_quantiles_high | rank 3/298 | 0.2263 |
Spectral Graph › Spectral Graph:spectral_dim | rank 5/298 | 1.8889 |
Zipf–Mandelbrot (8-bit) › Zipf–Mandelbrot (8-bit):zipf_alpha | rank 2/298 | 3.7681 |
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